PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04833.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 335aa    MW: 38461.9 Da    PI: 6.8766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04833.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+++++++G g+W+t +++ g++R++k+c++rw +yl
  Rsa1.0_04833.1_g00002.1 14 KGPWTSEEDQKLIEYIQKHGYGNWRTFPKKAGLHRCGKSCRLRWTNYL 61
                             79********************************************97 PP

2Myb_DNA-binding51.81.9e-1667111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Rsa1.0_04833.1_g00002.1  67 RGRFSFEEEETIIKLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.213965IPR017930Myb domain
SuperFamilySSF466893.12E-3111108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001676.68E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2665116IPR009057Homeodomain-like
SMARTSM007175.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.10766116IPR017930Myb domain
PfamPF002497.3E-1567111IPR001005SANT/Myb domain
CDDcd001671.75E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MARSPCCEKN GLKKGPWTSE EDQKLIEYIQ KHGYGNWRTF PKKAGLHRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIK LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HTRKKLLRMG  120
IDPVTHSLRL NLLDISTILA SSQYNSSSHH VNMSTLMMDS HRQQQQYPLV NPEILKLATS  180
LFSQNQNQNQ VVDHDPSTHV NQTGVNQYQI NHQELQSYLP PFPNEAQFND MDQQFNGFGE  240
HTLVSNTSVQ DCNIPTFNVY ESSGFVLDPF YSDQTFNFAT SVLNTPSSSP TMLNSCSTTY  300
INSSSDNIED EKEHHCNNLM KFDISDFLDV NGVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717220.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A078DXS00.0A0A078DXS0_BRANA; BnaC07g36700D protein
STRINGBra038774.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.10.0MYB-like 102